Scaffold Ga0183748_1003552

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1003552
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8052
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F023748	Metagenome	209	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100355213	F023748	AGGAGG	MSKEYKYTYRFSEQTVDTRYYKVESNKKLTYHEMQDIAWSVEMKEGETYKDKDGKATFEGTEYGDDAQYQMEEGEEDLIDD
Ga0183748_100355219	F013187	AGGAG	MPTKSKIKKKPKKNTWVYIYGDEMIEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG
Ga0183748_100355221	F105326	AGGA	MGQERNLTPTQHWELHQGLWHMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFPISKEN
Ga0183748_100355222	F021207	AGGAG	MSKRFKQVNVQHFATLVQEIDVSKYTQKEYVKIVEELYMGIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI