Scaffold Ga0183748_1003452

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1003452
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8194
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024093	Metagenome / Metatranscriptome	207	Y
F031892	Metagenome / Metatranscriptome	181	Y
F066695	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100345211	F024093	N/A	MAKIKEIHYAASEIADDVIKEIYKQCDWQVGKFLPEDSEGDEINEAHSYMMRTVARHIANKLDVTTNKYYDE
Ga0183748_100345214	F066695	N/A	MELLTDEIIKQALEADGFMEEPDASWLLEYINTEYGSELDTDSSWCDDKYKLKIYSESTADSYDMYWCTHDERPYVSQDGYYYEDHNEWADRAIEELTSGCDVWISPDIWSDMEYDFNYNLEAWWPDIYEEKFNDKREELLDSGEYTENEHDE
Ga0183748_100345216	F031892	N/A	MKSVKFNTIVGTLDAHAMETMNKKGPEYTTGNEDVLNNFKATASKLGVDPLVVWYAYFDKQCSSIAAHVKDDKLQQAEPMISRFGDIINYAKLGYALFYERHANAKKSGK