Scaffold Ga0183748_1003309

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1003309
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8455
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F022555	Metagenome	214	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100330910	F006867	GGAG	VLQGRELAKAIQKRSRIQPGMLVKSSGGSPVIKIALVVGLSAGCKFSQDYEGAEEHIFYKCEPLDGTPAFVDYVCNMEKVS
Ga0183748_100330912	F063682	GGAGG	VKPGDLVRIRKTSIDHLSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGETVFIHKSHLTTRMY
Ga0183748_100330915	F006383	GGAGG	VLNSRDKMWAVQQPGTILRSRWGNENYGKLALVLARAYDGPKPSNGYPPRRYVKMQWITSGERFEEMLVNAHNCFDIVSSCDNVGHGG
Ga0183748_100330916	F022555	GGAGG	VAIAPKFKPGQLVKYDHPANPLVGLVKSTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS