Scaffold Ga0183748_1003140

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1003140
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8746
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (95.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077930	Metagenome	117	Y
F094534	Metagenome	106	N
F096210	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100314010	F096210	AGGAGG	VAYEHNWNPQDKLTYEQLVEELTPIVVDLTDNAFAIKKSSDDGGTVVEIYIEEGLQGKTQPRLPPQCKGWRVVWVSCPQGYIDAFEIRR
Ga0183748_100314011	F077930	GGAGG	MEYHNFVEALDEAMQFIAKEYPTSVWEGDVHDFYALLVKANFSNQVFMDYLKHAIDNKVYLPSNVECIVDKGRVSKVVIGGE
Ga0183748_10031406	F094534	GGAG	MQIIKWIDDYRSSFAVVVECKNKSYLVIDDSYSVIIYYSDREGVVSEYPEICKIEGKMLSEVISDNRTFISNLRIWSKNDRNQVAKNLETVIL