Scaffold Ga0183748_1002744

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1002744
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9538
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (96.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F064107	Metagenome / Metatranscriptome	129	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100274414	F095340	GGAG	MIHCGELVKIIKGQAKGDIGIVLDYRHTGRFYPSTELTIKLSCGRTIKKDYKTVEKLGENND
Ga0183748_100274420	F025385	AGGAG	MNNSRRTDDTGVIQAFMDQQSAKSPSMKTDGQSLFSFDTRIAEHIPDGDGRGATIVYDYTYGGGAYVSPTTSNHVRLTKKQVPRQNWMTVEEGREHGLITEPLPKVRNGKTSSNT
Ga0183748_100274421	F035970	GGAG	MDKNFQIILKTAKELAEDYGREGWTGDCNDFTQASSSVSQELTNLEVERLWEEFANEEFIADGVIFTFVRQGRDKVIKLEQVDSF
Ga0183748_100274429	F055213	AGGAG	MTNTQRFGQPQVGDLYVSETQERIHILVAYEFVYKDRIDFYKYYKSTLRRLDDGAITSWTKPQHEFYRKYKPLNAETKEQADRN
Ga0183748_10027446	F064107	GGAG	MSNQIKLTIDLSDELVDKLLTVMAITSQKNALQGAMPMLMGMGGATPPPPSKGKDKPPMGFNMEDSNDNQTSKEKE