Scaffold Ga0183748_1002473

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1002473
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10216
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032640	Metagenome	179	Y
F073494	Metagenome	120	Y
F074857	Metagenome	119	Y
F101078	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100247313	F101078	GGAGG	MNIIKRTGIIKVSEDGVAREIILRLQGLRLQKVESREIPLRYKPSHYVNQYKRLYSNMKS
Ga0183748_100247316	F073494	GAGG	MVSDNQWESNEISMWVNNDESLHRLAQQSESSNDFFDVLEMIGVYQIGGIKITPQNVRESWEDAND
Ga0183748_100247321	F032640	GAGG	MRVIDKKISALILKGLEGEAFDRKLSKRDRVVSDGTGKVSVFLWKTEIAEFDPYVNEIIVKDGGYQTVTTKSRINAMLSGWARNNPSISQRKWVWYLNTVCPLTKDWKSQEFQGVARFPLKIWR
Ga0183748_100247323	F074857	AGGA	MNHRKSLTYREVAEQAQKLSEMAYLEACQPKELRNQALMNHCYKQAKLLTNRLKNAGYWKNSVISLG