Scaffold Ga0183748_1002277

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1002277
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10721
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F034139	Metagenome	175	Y
F038722	Metagenome	165	N
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100227716	F014114	N/A	MKEYKATDPEMIQAQKDLAKMSSLSNRVISNDDDLFKELATIQRNLCQISELKSHFLQRYEDILDEQHRLETQLCVFQNEMLHSFELCFRYYKTKKKGFK
Ga0183748_100227717	F056669	N/A	MSLIKSYILSIEEMGFDPYKLNKLSSEQWENLITKALKSGNKKLYETLILTRCKLSLKFTDCDLTDTEEPF
Ga0183748_100227719	F101298	AGGAG	MDRDFQKVLQALTAFDKKLSLLEDVVRQLAEANVNYATSQQELNKEQSELNRDLGDGIKMLGDNLALVIKFLQKKGGNN
Ga0183748_100227723	F038722	AGGAG	MNITESRDEAFEAIAEMLRSNVKKTKIASQLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKINFN
Ga0183748_100227726	F034139	GGAG	MTNKLEQIRNDLNKYIEEQEKLQCRWPCDAEYNVPTWDNIYDALEAIESIIDYEPSDAELEAYNNSYSDPPYVRNQQMLEMKSESHGRRFV