Scaffold Ga0183748_1002258

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1002258
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10750
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014553	Metagenome / Metatranscriptome	262	Y
F071306	Metagenome	122	Y
F081207	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100225815	F081207	GAG	MTNKERYKREIKNLRKLLDDNEYTRVLSNGYHHFLSEMHRKLVGNARISPKMLSAVEQAIESYGNYNSPEDKAKRDSMLSKITKLKYLLTKCGYTRQYEYEKMEFLDSITKRIHKRGKLTPKQAKYANQLYKQFNKRILP
Ga0183748_10022584	F071306	AGGA	MTYREYKPTWLQEKIFVDTYGRDYNLSDVPMTMMTRKEAFDKRGLNEEQIDEIYEKWIIDHIEEENE
Ga0183748_10022585	F014553	AGGAG	VPKKKTKGQWKDYKTFTLKDGTKFLARDEHDAKLYRKKVGDE