Scaffold Ga0183748

Basic Information
Taxon OID	3300029319 Open in IMG/M
Scaffold ID	Ga0183748_1002177 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029319 Open in IMG/M

Scaffold ID

Ga0183748_1002177 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10998
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10998

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Red Sea: TARA_032
Coordinates	Lat. (^o)	23.36	Long. (^o)	37.2183	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Red Sea: TARA_032

Coordinates

Lat. (^o)

23.36

Long. (^o)

37.2183

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038719	Metagenome	165	Y
F062820	Metagenome / Metatranscriptome	130	N
F071303	Metagenome	122	N
F074765	Metagenome	119	Y
F078604	Metagenome	116	Y
F090494	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100217711	F062820	AGGAG	MTTTKIWNHINVGDLCVHCGRSTALGHSDMLFVDRIPADADLLDNDGNPIGVKEGYACRECIYVDEDDFFYEDNVSN
Ga0183748_100217721	F078604	N/A	MINENFYIIRSEATIKNVPQFLDSNFLKDLKTSNNELKPHISNLDTNSTYYGKKCIKCTIPTLFISIEYKDLNKDIYLIDHEVFLYSEDYPTMEALENYKNKFDFNFASQVEKEVYEIVESFHLGYGCECLSSGDY
Ga0183748_100217722	F090494	AGG	MSTKHTQTFKDFQTKHNLSYSNFFTFSNPKVLKNEKVSEIPTAILMLMNTPKACPAAGSCRSVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSIFLRYLVVNCFRHYTKHRGTDKVGFRLNGVSDYKWEDLSVKLTAEDTDYIKKAFNIFIEPIRYGSVIEAVQKAIDLNDNKLIRNSVQFYDYTKRIDRNFDKCKNELNYHLTLSHGSKEDTFKKALELGLNYAAAFNLKKSQELPKQFTYKGIKLNVIDGDVTDYRPLDNNNKTNIVGLHFKIVVNKDNAKKLNFCIA
Ga0183748_100217725	F071303	N/A	MVKLVNLNRRLKTPADKAAFQGKNPANKTTGPNTVGELQDPWRGTLDNNPLNDDFYQSSYTFSGEAPEVQKKLDGLQFEYGNAFEEGNNEFAAXXXXEDKGLIEEDRIVRPENLSQIATQPAASSNAIQDPNVAGKFPSQEVNV
Ga0183748_10021775	F038719	AGGAG	MDSKTREKILHRCEILTYMGDDGIPCIYDELPDDELMEDCGWVLDKAHDDLDNFQLGLTRKIINKAAARTANDMWS
Ga0183748_10021778	F074765	GGAG	MTTTTPKQTKITVSKLSHRLSRNGWISYNCELRKGRTTLAAVDQEGVGGDERVAWNNTEHYLLIHHWILDTQRDFWREYEVETINYMVELGHKSLKDSWKEKAELVKKFNLWEKLAKKKPKSWKEARGIQQQLDFHDDMVGSWTTVYVENKLADKYYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183748_1002177

Overview

Ecosystem & Geography

Associated Families

Sequences