Scaffold Ga0183748_1001991

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1001991
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11557
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F004869	Metagenome / Metatranscriptome	420	Y
F020546	Metagenome / Metatranscriptome	223	Y
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100199122	F004869	AGCAGG	MTCDREHYYAVQTFLEDDELHKIWNIIEIAMNREGYDVENAELSMRLYDSELTENIEHDYLDSLSEGYDTKVDALVDSMGVTDQEVSTAHRRRDLDTL
Ga0183748_100199123	F001479	AGGAG	MSKEMLFLCDVYDKFLDENDLPHRSADDILYGENAMALTSNQKYWLESFIATWEVIAEHC
Ga0183748_100199124	F056679	GGAG	MKLVTHIDVHERLDEDIQFQINNALGLWSSKNDADLWEDVRKYILPYTLKSVEFEKNRPHSLTSFK
Ga0183748_100199127	F020546	AGGAG	MTTKHMKTDPNKDFTIKEFYIKVKGDFGKEKNVRVNDMGDKLLTLITDLGWEYQRMGRSGRQVFDEIHQLLGTIPEGEVYMEI