Scaffold Ga0183748_1001866

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1001866
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12073
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060436	Metagenome	133	N
F064207	Metagenome	129	Y
F070211	Metagenome	123	Y
F078603	Metagenome	116	Y
F104989	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100186619	F104989	AGGAGG	MIKNLTPAEHWELHQGLWTMLGCDMQVYKQDSDRIIYIDKNSKWAYKYEKGFIDRKLQTNPDRRYL
Ga0183748_100186624	F064207	AGGAG	MEEFTDREKLILDFLKDNNVDIEEVIDAIIKANRFVGVGLVRLQDIMIDAVKKHFKQESLDKIMNG
Ga0183748_100186627	F060436	AGAAGG	MSRFNKINVQHFATLVQEIDVSKYTQEEYREVVEELYMDIFRHNTNGQYVIETLPNAKANWRVYEETQTQEEALRLIKERNKYGGN
Ga0183748_100186628	F078603	AGGAG	MSRNNLDIAMLITDAILNEFERNGKVNIPLDEHKYSFPLQDRIQIELEKIANEKGIVNE
Ga0183748_10018664	F070211	AGGAG	MYDPVVITLLEKNVKELQGQLVNANKRIKALTDENYKLRRAIGIEKDNGKQVTNNSGGVWLGDAEMPDAEHLKDE