Scaffold Ga0183748_1001780

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1001780
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12492
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020003	Metagenome	226	Y
F048238	Metagenome	148	Y
F063605	Metagenome	129	Y
F095308	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100178010	F095308	N/A	MEPPKTVTTFMEDGCVSVTVGHLTGVVSSAHLIEPKENQLRQRWLQENAINDD
Ga0183748_100178013	F020003	N/A	MSTKLNGNRYSAAGTRVPTDLLPTAIRYEAARAVIFEQQGNFVRANDCLRLKRHYERRAMEECISDPGPT
Ga0183748_100178017	F063605	GGAG	MTIIRTDDIDDLLPSEYQEPWPPLSDEEIEERERQAEFQDYLDSIPDAAERNRNLK
Ga0183748_10017802	F048238	N/A	MGTKNVHLHYCHIVDEHCPLAITRFTTFDIDDKPLAVEQVTYESNMDYMERQVINALRCNVEVSILTSTPIHEFKRLHHIFNCDK