NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1001548

Scaffold Ga0183748_1001548


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1001548 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13729
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (34.48%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030401Metagenome185Y
F043348Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100154823F030401GGAMESLFGNNAKATLQKMVKKGLLKVSDLDKPSEGWFIAMGYERETGTGKWKRLLRTKSGATPSLRLENIPKWKNTLTGKITFDPVEYEKQN
Ga0183748_100154825F043348N/AMSCTLADKNRRKKMLRSQLAGINDPYELLAEVIADNERLRQYINNNDCHKGKP

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