NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1001099

Scaffold Ga0183748_1001099


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1001099 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16544
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015400Metagenome255Y
F020606Metagenome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10010996F015400GGTGGVLGFVVLASLLIYFYRLLKPTEDEIEYLEAIKTEATVALKEAELRGRLEKDRIGAVKSVFKNRLRDTEKIDDREERLKALIRLHKELDI
Ga0183748_10010998F020606AGAAGMKKVVALILLFSLNAAAAEVTKFEPRPAAVEQEGNTYVGILLSEEDFRKILEKKIDTNAKLAECSVDQKVCTQVQQTYIRSITKLEEQLKKNNSWFDRNRGTLGLLTGLVIGTGVSIGIVHAVYQR

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