Scaffold Ga0183748_1000664

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000664
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22952
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019554	Metagenome / Metatranscriptome	229	N
F021405	Metagenome	219	N
F024208	Metagenome	207	Y
F094416	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100066413	F021405	AGGAG	MSEQIEEIIDIEEDRLKYRVDYIRENLIQLSDKLREKIPQGLTDEDLTKDDTFKNWVVVNSIYDASMKDKTSDGFNRMLYFLFDKCRGNIARIVSNYDIDIKFNTAGQLEDIKLIVLEEEENDE
Ga0183748_10006642	F024208	AGAAGG	MERFTITKTHRWGNADTRISHVYSAARRDVKKDDVIRIANQMIENERVHTNEEVEYEVLLAYDNGNTEFIHRVEKGGKRSL
Ga0183748_100066422	F094416	GGA	MFEVLTALFIMLSAGLGLALYKSINRLSFYEDMQNDMYSRFVALGESIRGVLSREIYSDDPVIRNFVSQLQDIEYYLQQLDEAYKFNTLGEEVTDES
Ga0183748_100066423	F019554	GAGG	MSLEKLKDISLFEGKSLDEIFNVIYQQSLEERDEAMSTFKKFKNMIGDTEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLENEKKESVNANDILDLLDKEGIAPKRFIPDSDDEEQSQTKENDPQSGGQSVVEFPQLKKKV