Basic Information | |
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Taxon OID | 3300029319 Open in IMG/M |
Scaffold ID | Ga0183748_1000664 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22952 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Red Sea: TARA_032 | |||||||
Coordinates | Lat. (o) | 23.36 | Long. (o) | 37.2183 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019554 | Metagenome / Metatranscriptome | 229 | N |
F021405 | Metagenome | 219 | N |
F024208 | Metagenome | 207 | Y |
F094416 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0183748_100066413 | F021405 | AGGAG | MSEQIEEIIDIEEDRLKYRVDYIRENLIQLSDKLREKIPQGLTDEDLTKDDTFKNWVVVNSIYDASMKDKTSDGFNRMLYFLFDKCRGNIARIVSNYDIDIKFNTAGQLEDIKLIVLEEEENDE |
Ga0183748_10006642 | F024208 | AGAAGG | MERFTITKTHRWGNADTRISHVYSAARRDVKKDDVIRIANQMIENERVHTNEEVEYEVLLAYDNGNTEFIHRVEKGGKRSL |
Ga0183748_100066422 | F094416 | GGA | MFEVLTALFIMLSAGLGLALYKSINRLSFYEDMQNDMYSRFVALGESIRGVLSREIYSDDPVIRNFVSQLQDIEYYLQQLDEAYKFNTLGEEVTDES |
Ga0183748_100066423 | F019554 | GAGG | MSLEKLKDISLFEGKSLDEIFNVIYQQSLEERDEAMSTFKKFKNMIGDTEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLENEKKESVNANDILDLLDKEGIAPKRFIPDSDDEEQSQTKENDPQSGGQSVVEFPQLKKKV |
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