Scaffold Ga0183748_1000634

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000634
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23682
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004549	Metagenome / Metatranscriptome	433	Y
F007401	Metagenome	352	Y
F033764	Metagenome	176	Y
F036271	Metagenome	170	N
F073582	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100063411	F007401	AGGTGG	MNHEEILKQRDLLDTILASRTNQLDRIENMKIMDSIYFKKKLPENVVLFPLQRIKRYVHNTTNKPDKNSKKV
Ga0183748_100063414	F033764	AGGAG	MHIDKYVVNNIGTKWTKGKDKKNCILDSLDGTDGIELKKLVPLLEQWFETVTGGWSDKKVELIINVKEEDR
Ga0183748_100063419	F036271	AGGA	MSKAVNILEVLEKAHQSPASVSKMNKRAIIDAYGRALTMKKVLDDFIKVNRNLIIEMGIGENANLLHGKDYSIHVTQKLSVKIDTNLVKXXXXNKKATIEEVADFRITA
Ga0183748_10006346	F073582	AGGAG	MTVLKKDYEAVFKEGFKLGTRLARAKINMMRANDSRMINDEPMMKHYQEYADTWTQLAKNCGRKFTPPVAHSLSQPSIDLGDVELLNHKYDDKPEDEDGYQEVQVGGSGN
Ga0183748_10006347	F004549	GAGG	MDIKKFKSVAVAIDTYLLLKKLAALDDRSAGMQITYLVKQEAKKRKIDAKT