Scaffold Ga0183748_1000632

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000632
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23732
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (89.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F026042	Metagenome	199	Y
F043975	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100063216	F043975	GGAG	VMKVKRMKKGDLVYLPSDITLIDNFTVKRWIKLEEPILAVMIEPQVNKEDIYHKVHVMGSDWYVRTIDTMEVMSRA
Ga0183748_100063224	F005620	AGGA	VTEEETFTKQIETFKTFCRNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLMKMGCVPTQLGDFEASYDLEWMNIPPVARLLKIKKGAPKVKDPKWLRENG
Ga0183748_100063227	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTINWVTAAEAYAHEFEPGCKAEVTLHLLGKVLEKAAGELEKASAELAEEVFGNEGTS
Ga0183748_10006325	F026042	GGA	LTFDVLKILEQEGYIKDGEDNLVHAEKAFFAARVMRWIRNKVKTEPDFNLQAYLTMLLYYKTDMADLKFCEEEDTLLYKMKNPDDEVQNIVDQLIKNIGKSASEPPEEGEDTTSTTEDADGTPDS