Scaffold Ga0183748_1000565

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000565
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25296
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F028314	Metagenome	192	N
F042628	Metagenome	158	Y
F105330	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10005652	F105330	AGG	MDKSVWKKWERWWADAIGGDAVNAVRNPVTGRSGRAGHVPDVESIKFALEVKAGKVVSSRTLKAVQQARDAGNATRKIPIVAQTHKVNQNTAVHLVTMELDVFLDLTKELRNEERRIKKSLDSSKELGM
Ga0183748_100056520	F042628	N/A	MGKYNKSNKNNIFRDKPEITISEHTVVKNGKKMKIVVPEGKIGYGDVESHAQMAGDLATKHSDDNKAGEKAYEEVRRHRDTDSGSTIEENKLKMAYNKMASRMPVIQQFKITDNTGKHIATEYLFMKTEPSGLTRPLKIRVDLGTGKTEEIPV
Ga0183748_100056523	F028039	AGGAG	MTTLLGRWETIVKQIRFENNWAEILESYLEKQKLDELPEPEWSDDPTMAYVYLPARSLNGELVRYDKTKARMFPESIVGYLEKGGLMKLPAKVAASKTKEQLPKMETEKPKLDKKIEKLGDLQDE
Ga0183748_10005659	F028314	AGTAGG	MMKLFTSLMPLIPQPYKNIVKFFLATLKNVDEKEELERIGKLFADILEDGSVTPQEWLSLAGKNGLGILKGNGK