Scaffold Ga0183748_1000315

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000315
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32544
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (86.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F031481	Metagenome	182	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100031510	F098215	GGTGG	MRPEFRFNIGDLVSFTSRRLAEEHVDDVVLTGIVIKQRFVFTADNRFLIKTPEKDYWVPRPALTLISTANK
Ga0183748_100031511	F059941	AGGA	MKLGTLVQFAAYGAVMDTGYISKYDDDPEFMWVECVKMGPQRVRKDHTLLEVISEGR
Ga0183748_100031514	F063682	AGG	MGLKPGDLVRIRKTAIDHYSTNWFIWHAEHMTPLLVVEELNRSYVRVLKPDGDTVHMHQDNLTKRMW
Ga0183748_100031517	F006383	GGAGG	MHRVEKKQQPGTLLRSRMSRNYGKLALVLAKSYAGPKPSNGYPPRRWVKMQWCSTGEVFEESLVNVNNCWRIVE
Ga0183748_10003158	F031481	GAGG	MQAGDLVKRQKGWMGWQKQQLGLVLWVDRAVVKVQWSDDYGSFAHPITSLEVISEAR