Scaffold Ga0183748_1000285

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000285
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34002
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F014071	Metagenome / Metatranscriptome	266	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F031481	Metagenome	182	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100028528	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTINWVTAAEAFAHEFEPGCKAEVTLHLLGKVLEKAHKELDKASAELAEEVFGTEGTP
Ga0183748_100028559	F022555	GGAGG	MGIKPKFKPGQLVEYRSGDHALVGLVKTTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSDLKLVESV
Ga0183748_100028560	F006383	GGAGG	MHDKMWQVQQPGTILRARHSARRGQLALVLARSYAGPRPTNGYPPRRYVPMQWLSSGERFEEMLVNANNCFDIVSSCDNIVDGGE
Ga0183748_100028562	F015346	GAG	MEHKIYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGGHESKQYPVRYLVEL
Ga0183748_100028563	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIEELNKSYWNVLKPDGETVFIHKSHLTKRMY
Ga0183748_100028569	F031481	AGGAGG	VRVGDLVKRQQGWMGWKRQQLGLVVNVDGAVIKVQWSADYGTFSHPITSLEVLNERG