Scaffold Ga0183748

Basic Information
Taxon OID	3300029319 Open in IMG/M
Scaffold ID	Ga0183748_1000237 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029319 Open in IMG/M

Scaffold ID

Ga0183748_1000237 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36063
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (75.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36063

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (75.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Red Sea: TARA_032
Coordinates	Lat. (^o)	23.36	Long. (^o)	37.2183	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Red Sea: TARA_032

Coordinates

Lat. (^o)

23.36

Long. (^o)

37.2183

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009492	Metagenome / Metatranscriptome	317	Y
F009778	Metagenome	313	Y
F010689	Metagenome	300	Y
F014670	Metagenome	261	Y
F095602	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100023723	F009778	N/A	MSQRFFNLRQYLLHMIKLKDILLETQIAHTQKSLQWVYHGYIPMTPKVMKQIMGDVPITTFHNLDWFAIQNQLPKVLGTKKSISTYTGDTSNRLSKGGGVQTKGGVVLEVEGKVLVAGTEDLGSVPDEAGRRWIAPEVLGKILGMKDLQGGGSGQKYKKELYKIDKKLDDMLYKYKTSLLVMPSDPPDAKERFPLYTGKQKAELIKRWIDASNKFLLKNKKKIRKSFMDNVNNPKITAFMTKLGYNELLVYDVKVKDAYIVIDILGDPNDFEATESVLKKIKKDLKKYTKGKILTGFADGVKKFVKQRGGKV
Ga0183748_100023735	F014670	AGGAG	MSEDKQLFESVHNYTKFKLVEMLINRLNDGRTKVDDMNSIEDLADDVLKVLTIAGLKFHQELRGEFDK
Ga0183748_100023738	F010689	N/A	MIEMIDFQGKKWQVVGKCSGEHIDDHTKLKENYGCDLVLKNNQNQFFMLNEIIDAEFEDI
Ga0183748_100023745	F009492	AGGAG	MKNLSIKTLITYSIAMMGLFGIVRAEEVVTETTQPVVSVTGEFSTDITFGDVTTFTSPYTGLVFSSDGWVLSTNLADGMVNIEEAKYSWTVVDGVTLTFGSQAEPYGLAWGLHRPATNWFASTPREHMITNGVGFGLNKWGVGADLFWGGDSMDEEGESELYWAGRFSYGLNLLGIDSNFGLSLNSNEAQLIDVSAGNDTFEASLEYDLSEEADGAYWMRGVVTPPFGQGAFLLIGLNSDDIVTYGVGYKCSDNMKVVSEFTSGKDSDGNEIENDFSIRASYSF
Ga0183748_10002378	F095602	GGAG	MNLDVLVTQFANFGLTIFSIVFAIILVNWLDRNVFNKKRRNDNDKWD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183748_1000237

Overview

Ecosystem & Geography

Associated Families

Sequences