Scaffold Ga0183748_1000195

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000195
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39170
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F006348	Metagenome / Metatranscriptome	375	Y
F008624	Metagenome / Metatranscriptome	330	Y
F010476	Metagenome / Metatranscriptome	303	Y
F059056	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100019510	F006348	GGAGG	MNKFYIVEGIEFDSKFKNEEEIKDLKWKQENGLGVWSAEGKTEDERISKLFDKVQDYMGVYLTSLSYCNNRPHPLTAFK
Ga0183748_100019512	F010476	N/A	MFDYKIVAYNKLGKIQETENLFCAPDEIDDVMYTMSEQYGYAEALDTMDTHMGEYGQRPLSLGERRYF
Ga0183748_10001955	F008624	N/A	MNPQAHRSTEELKTIVKALSKLRFLNTPEEDQRLFECEEELRKRKREDDFINAHFQVITY
Ga0183748_10001956	F001419	AGGA	MYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFYNYDN
Ga0183748_10001957	F059056	AGGAG	MTGIELFILIGGCYALYTVGMAIATTIDYYSTEKEAKLVKLGKHRQF