Scaffold Ga0183748_1000188

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000188
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39694
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (33.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F020003	Metagenome	226	Y
F091006	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10001881	F011846	N/A	FLATIEKENEGSSSADNYLRYTKLDQGKPANFALLEQDPLEYWLVWGVAKDNDSMKPFRFLEQPSQEDVDLELGSDYVQSMNWDKTAVRKPCQCLTWPVYNWDAERVQVLEVSHISLARQFAKYGLNKKYSRNLLDWDFELSKIKADMVKYELLIVPRDEDEHDEGAMAKAWLQAEKAGFDLNRIVTGGDPFSEG
Ga0183748_100018827	F091006	N/A	MGLRFEEINPPKKEEKPAVKKTTATKKTKTSKVAESTDS
Ga0183748_10001886	F020003	N/A	MSSILNGNKYSPEGSRVPTDMLPNAIRYEAARAVIFEEQGNFVRANDCLRLKRYYERRAMEECVSPEPQNTNV