Scaffold Ga0183748_1000047

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1000047
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64164
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (82.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F063094	Metagenome / Metatranscriptome	130	Y
F104998	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100004723	F003637	GAGG	MAKVIAEKVQEQVQVDSPKMVEIKHIRTMQDASGNDVEVVDYTDVKSVDEAIADCEAYKANLQAQLTECEAELADYIAIRDAE
Ga0183748_100004736	F104998	N/A	MSYLEFVQKEKSDKYGMYVPEIQCSYCGNSKKGDSPTISIDKCEMCDDRDWQSSCCTALPFGNSFIEEEKTGICSECYNGANFADLNMEE
Ga0183748_100004776	F063094	N/A	MCKCQHCNAPNPEGMFNCPSCGKRAHPPKWSTQFVMRDTPMATAIRKDQIDFGSKSMGDHIEQTKKKNAKLREKKMNSLIKWD