NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0185543_1106239

Scaffold Ga0185543_1106239


Overview

Basic Information
Taxon OID3300029318 Open in IMG/M
Scaffold IDGa0185543_1106239 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032075Metagenome / Metatranscriptome181Y
F092098Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0185543_11062391F032075N/ADSEDDLIGKNLPRQEKIKYLFNRFNSEYDIDIERKGKHKAMTDWLSGLALNIPYYHFDIIELAKEMGSIDENSDDAVEDRVIENYFSFMANMVLLLEDEIKEVA
Ga0185543_11062392F092098AGGTGGMKITININTDNSAFWNHCEDSENPTFEYSEVERILKNILPRIEISDYGKSNDINGNTVASFTVERDNQXN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.