Scaffold Ga0185543_1045519

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1045519
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10455193	F003531	AGGAG	MKRKKWTQEEIENARELLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKEKDTYVDY
Ga0185543_10455194	F025411	GAG	MSITRIYRDRDNKIKVKKFSFEEVKKDLTKFFSHDNGINNRKDKNETKRFITDTKNSXR
Ga0185543_10455195	F005656	AGGA	MKLRDLLQIQKIVEDRAIPYDVLEFDSKHYSKSKDMTVDILDLHLTHAIRILNNYLEDNVYPKYSDRQEINDSLRGIRDRVEDISEVVNKXVNYQERK