Basic Information | |
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Taxon OID | 3300029318 Open in IMG/M |
Scaffold ID | Ga0185543_1013822 Open in IMG/M |
Source Dataset Name | Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1961 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Indian Ocean: TARA_038 | |||||||
Coordinates | Lat. (o) | 19.0393 | Long. (o) | 64.4913 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004493 | Metagenome | 436 | Y |
F006217 | Metagenome | 378 | Y |
F048640 | Metagenome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0185543_10138221 | F006217 | AGGA | MIELLLSLAAAAPDENAITKYCMSRFEHWTDRASCAQQLRHIERKQEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIG |
Ga0185543_10138224 | F048640 | AGGAG | MQPKELHAHARIKFEPTRVQKQLECRLFGKTFRSIAAAARYYELSPSTAYEWHHGGMYRETFPNTERWDKWRNNNEAV |
Ga0185543_10138229 | F004493 | AGGAG | METKFTKNKELGFTDNQWGQLIESNGLLIMWFIEWNNREWHDIPDMKIQDFFAQKYNQSAGCDPWPMKGKVSLDGKYVSEYSDDEDLEPYFMIDTSDGVGYIYPYAFVALPKKGGGHSIVRMD |
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