Scaffold Ga0185543_1013822

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1013822
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1961
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F006217	Metagenome	378	Y
F048640	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10138221	F006217	AGGA	MIELLLSLAAAAPDENAITKYCMSRFEHWTDRASCAQQLRHIERKQEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIG
Ga0185543_10138224	F048640	AGGAG	MQPKELHAHARIKFEPTRVQKQLECRLFGKTFRSIAAAARYYELSPSTAYEWHHGGMYRETFPNTERWDKWRNNNEAV
Ga0185543_10138229	F004493	AGGAG	METKFTKNKELGFTDNQWGQLIESNGLLIMWFIEWNNREWHDIPDMKIQDFFAQKYNQSAGCDPWPMKGKVSLDGKYVSEYSDDEDLEPYFMIDTSDGVGYIYPYAFVALPKKGGGHSIVRMD