Scaffold Ga0185543_1009290

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1009290
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2463
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052547	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10092902	F052547	GAGG	MGIVTNNKAHAQASDDFDLSFSEGHKVKVQFNCEVLSGCEFKCKGCFVNKLGSNVGSFDKLNNAIDLFKNNGYHVSTINIGPTDLFGNNNIISLLEDEVFRECLSKVTTIQFVTTLENVDLQVIDKLNSIKKRDGFMYDCNIQLQPPVNWADIKDKMSALDLFWDDLNYYFVYNMGNDDEYNEQVLDMSRVTDKVFDSILTLNPSFFRAQKSKVHKHLIEKWKKYDFSDDLYPKTIVDQAQGGSLELNYTFCNDRFFWTPFVYDIVLIGTDEFEIKDPTDLNSWEEPKTNMFTKQLMYETENCSGCVNQMTCIDKGVLSYMQHHALTACVFPGVVADN