Scaffold Ga0185543_1008523

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1008523
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2587
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007344	Metagenome	353	Y
F032626	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10085236	F032626	N/A	MDKENLQTKVEALQDNLKVKHDELIEIQQQLSVARVELANLGKTVISQDDVCSLVDLLQGMFNDILNDADTSDLSPEFSIDYGNEVRLDCIDMSAIEVHSGDIESVIEQVFNIVSDNS
Ga0185543_10085238	F007344	N/A	MTSYEQRAYDTLAMKLTEAGYSYQNTSWNNDATASISVTCARLVGEEVQEFEFQIYIPNCDYFDPDNEYFNTYALTDEMTGHTFDFDRADEVVEHIQDCTRDVIFTN