Scaffold Ga0185543_1006041

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0185543_1006041

Scaffold Ga0185543_1006041

Overview

Basic Information
Taxon OID	3300029318 Open in IMG/M
Scaffold ID	Ga0185543_1006041 Open in IMG/M
Source Dataset Name	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3159
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_038
Coordinates	Lat. (^o)	19.0393	Long. (^o)	64.4913	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060349	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10060412	F060349	GGA	MISYFQLKDLDHFKMSVDKNKKKVLKQYPNAYIDYRQEGVRVMSGDTYLAEEYFMPNTYNEDTAWEYAAIACKTTQNFNRTHPSRMDLKSIESKLDRINRRKRRGRRVK

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