NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0185543_1001785

Scaffold Ga0185543_1001785


Overview

Basic Information
Taxon OID3300029318 Open in IMG/M
Scaffold IDGa0185543_1001785 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6163
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018831Metagenome / Metatranscriptome233Y
F018932Metagenome / Metatranscriptome232Y
F031501Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0185543_100178514F018932N/ALKSNRATRHQEIYKRTKNGLELVLPKKIKSDIGFQLMFGHREDYRIEKEKIQRNADRYFTKTYLDVEDFKKYI
Ga0185543_100178516F018831AGAAGMKIIASISIEIKLDDTELLDDAKDRAVDTLIDNLDDWLNNNGIPPIISIEYKLPEYDENNLDFLN
Ga0185543_100178520F031501GAGMTSELLDLFDEAKRIIDKQEQLIKMQQTLIKTMQQGLEGVELNELLLKKQLADLQEELETITKDYIDVMGGGEKV
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