NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0185543_1000838

Scaffold Ga0185543_1000838


Overview

Basic Information
Taxon OID3300029318 Open in IMG/M
Scaffold IDGa0185543_1000838 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9077
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020459Metagenome224N
F089519Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0185543_100083811F020459AGCAGVLRLVLVKVFYLQPVADNNTEEKKTSVGDDESKRWRKGRGAAHKVEERAQVCYGYILEGGTRHQIAEKVSSRFNVSMRTAHDDYKRAMELLRTEQMGTREELLNQLQALRLATVQKALKRGHFQTVATLLGDMGRVIGEVAPEQLALQVPTLDIRIEGKD
Ga0185543_100083814F089519AGGMASRVEIQHRLSYARAMLERGIPVASVATLLSARYFVSRSTAYTDITDAQQEIQESDDGPAVEEMEPCNPAGVLAMLQHRLEIAIATGDDKQTCQLIKAMDTAKKWQGYNTQTVSPFA

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