Scaffold Ga0185543_1000679

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0185543_1000679

Scaffold Ga0185543_1000679

Overview

Basic Information
Taxon OID	3300029318 Open in IMG/M
Scaffold ID	Ga0185543_1000679 Open in IMG/M
Source Dataset Name	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10145
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (56.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_038
Coordinates	Lat. (^o)	19.0393	Long. (^o)	64.4913	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F036270	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_100067926	F018189	GGAG	MELSKEQMEKVIYELECNYNSKIFDDENLIEIINLFKNYLNSGKTK
Ga0185543_100067929	F036270	AGGAGG	MHIESTDKQGVFRACEDGHRLLELINDMGWDYDRFSSSGQETYDKICVILGTTEEDNNET

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