NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0185543_1000573

Scaffold Ga0185543_1000573


Overview

Basic Information
Taxon OID3300029318 Open in IMG/M
Scaffold IDGa0185543_1000573 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10964
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (41.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048928Metagenome147Y
F085581Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0185543_100057313F048928N/AMAYENLFTGRLVLFNNSDKKSAKSPDLGGNIEFTLQDAMALAEWITGQEGEDNYAGEKVVKVPVSAWHKESKNGTPFVSGAISVAKTEKEEIPF
Ga0185543_100057314F085581AGGAMAKVLKKVTDPKLPLNVAIFQDHLALGLECFDLNWFDFRPHTCSNKEYGEGLLFSQLDDSHKECCQAENSLIVSNEGLHLPNKKIMPFTNEQPPTKMALLVLSAMVTEQPLHFECPECD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.