Scaffold Ga0185543_1000003

Overview

Basic Information

• Taxon OID: 3300029318
• Scaffold ID: Ga0185543_1000003
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70524
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (34.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_100000360	F007770	N/A	MSGEGKSVSFRRTQMTAKSNQELLEEFQKIIYASPVTRHMKWYGKNHSVDILEHGDDNRQKWEQEYVAIKDTFQFEISVRESWYEDADLYESHKREDSFVSLAFKFAKDNHLMYFAEGFPAEWIETETTDGKECWNHYNVKPDDKNIDKICKIWHDYGMSMVKAEQYGQTDDMKSSYWASARDQIKGLMEYEQSR
Ga0185543_100000362	F016956	AGGAG	MIELEKPWKAPKEVALEIIDLALTHIKKVEANPEVETDGDNFDYWNSYQLEDGTYIDYNIYCGDDVGEFTDDGDYIYYDPSEWSWDVACYAVDPPTKDNPHHQIDTDRTQYLFHYNKEGDGKIVYED
Ga0185543_100000385	F005287	AGG	MKIKSSQIIYSEHDYDECFEYTDGSGRVPEGNAVGIVSEDGKSLTLFSDVKYSKYDHNYWDNHELEHDIDRIILP