Scaffold Ga0167331_1008511

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167331_1008511

Scaffold Ga0167331_1008511

Overview

Basic Information
Taxon OID	3300029311 Open in IMG/M
Scaffold ID	Ga0167331_1008511 Open in IMG/M
Source Dataset Name	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP12 - Kappala-digested 113
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3730
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	59.355554	Long. (^o)	18.227079	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039988	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167331_100851111	F039988	N/A	MEKKEFLKNLEDIRGKVNKLAIDRLNEQPDEEKEMKVLKCRLENYNDRKDGTVSLKLDSLLEVPDSDIAKIRGMRGNIAVAVITDVVDVLDADINTKDIMEHLPEDPFLDTRITPSQQQRRDLFVIQEKMLGRKPTKEEQAKFYIDRMARIHEENLQEIRELDNLSFEEE

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