Scaffold Ga0134545_1022776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134545_1022776

Scaffold Ga0134545_1022776

Overview

Basic Information
Taxon OID	3300029310 Open in IMG/M
Scaffold ID	Ga0134545_1022776 Open in IMG/M
Source Dataset Name	Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bologna
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1641
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location Name	Tanzania
Coordinates	Lat. (^o)	-3.6347588	Long. (^o)	35.0828588	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096729	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134545_10227762	F096729	GGA	VEDSRNVGVFASGFASSPGSFFRRRWLRGGRRRSDGDFASESALVVDLIRSGSATRGFVNVWWFVVAAWFRETSAGSGFVAAEVARNTDLVVFA

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