Scaffold Ga0183683_1013712

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1013712
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1907
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Fowlmouthvirus → Fowlmouthvirus fowlmouth (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F041716	Metagenome	159	N
F053565	Metagenome	141	Y
F057681	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10137123	F053565	GAG	MMKNYKDTYQNTLIASGNKNLTELARLTLLNILSVQGVIYTHYKNKQLNKKHRGIK
Ga0183683_10137124	F008386	GGAGG	VSSDKQLILIILVGVVILIYQYIKDEKKKHDEKLQRHLSKYFDSKW
Ga0183683_10137125	F041716	AGGGGG	VSREKKKLKPSRVLEIGNIFQRFMDKHKFLNNTGSGFFINALNEPERDLEFRYKNKNYLLTISEVERVK
Ga0183683_10137127	F057681	AGGGGG	MKKYTKKLFLDYASAFDYYDEMKETMQSWSLKDFHKFYGFTHKDWESGVEIKYKGEQ