Scaffold Ga0183683_1012077

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1012077
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2109
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051564	Metagenome	144	Y
F056177	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10120773	F051564	AGGAG	MPISKQMLKEWCETYEEAIETLDYLANRSVGTAKEEIKESLEDFFIDNGLMSEYQFRKEIGGKANENHN
Ga0183683_10120774	F056177	AGGGGG	MKTITKEYTVYDLEDLKQDDELCDKIYQKFWIDNGNNINFWADENLDSFKLFANTLNMKFDYSLSNAEYQDRGCYIKLTPDYYLDNKDYKELLKDYTGNEHYFCEQLKAFTLNLLDKKEYKVLCEWSTDDFVLEIQNKMFEMWFADNQYYFSKESFLNNVESNEWEFDENGNLF