Scaffold Ga0183683_1009160

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1009160
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2621
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013362	Metagenome	272	Y
F075988	Metagenome	118	N
F078605	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10091601	F075988	N/A	KLSQWFIDYMKDKKCKTFNQGGVDLSKNDPNDNWSALNPFRDSTILSDKVIEFINEKNLSGIKSSMDLVEQQSDKATKEQRELNTINRGTNE
Ga0183683_10091604	F013362	GAG	MSSEKQLILILLTAVVVLGYQCYKDKKKNDYWKKYRRSQGWD
Ga0183683_10091608	F078605	N/A	YIGLFEEADLNQKVKELKKLIKEKNDYIKILDKEIDTLKGQIDLRDLEIEMLKKNNG