Scaffold Ga0183683_1005333

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1005333
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3928
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040065	Metagenome	162	Y
F043885	Metagenome	155	Y
F058923	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100533310	F040065	N/A	MSKKPETLFSNQLIKNLNQVFFTRIENKHGGGVPDLYGTYNNKSAFLELKIKTKQNKLLISPLQISWNYKHFLQNPINYYLVNDPRRAVIELYNGDKGRELLENCNNVTATLTFSTDNWHLLTDYLFF
Ga0183683_10053332	F058923	AGGA	MSITFVYRDENNKVQVKKIDYEEVKKDLIKYMSHDIRSIIKEKEKDDE
Ga0183683_10053335	F043885	GGAG	MNIVFKSGDYVSVPMTENLFWNRVGYLRHAMLTAEDFEFRLLYFHKLQELMRFVP