Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1003125 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5844
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y
F020608	Metagenome / Metatranscriptome	223	Y
F034356	Metagenome / Metatranscriptome	175	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

347

Metagenome

311

Metagenome / Metatranscriptome

223

Metagenome / Metatranscriptome

175

Protein ID	Family	RBS	Sequence
Ga0183683_100312510	F007645	GGAG	MSKIVYGKRDTATVVSIEKAPPSIRSLWARANTLGVNIMRVRANKRRYDIQTGDTFLGYHGGKVSIYSQKDNPTRPLYFVRPTPLGKDNKGMQILEVASNIDVQDTFNKLAKYEYYMTNGLLARIILSFKRIFGFNF
Ga0183683_100312512	F034356	AGGAG	MTHNELRKGMRVQLTPIPIISNLPRFATVMDNMKGITRMVHIEEKNGYFADMGSVYVNEIQYVLFPDDMPQELEISEAHQKKLDLLTKIHWG
Ga0183683_10031256	F009922	GAGG	MENTFNINDFDKDRHAQPASFPQCRAIGLKFAKKGSVMNWRLQKQITGCMYGLAKENRLTFKKADSLLKGKTLPKVYFDKIKLYLEQQDS
Ga0183683_10031257	F020608	N/A	MKTKCKNPNGKSNMQTIKDSKIPLTKFNDFEKMEQYINELGYIYKGRNAFKEDRSIIYRHKNNKKHVFVKSTFDYLSPITMEMGTVWTVHSF

Protein ID

Family

RBS

Sequence

Ga0183683_100312510

GGAG

MSKIVYGKRDTATVVSIEKAPPSIRSLWARANTLGVNIMRVRANKRRYDIQTGDTFLGYHGGKVSIYSQKDNPTRPLYFVRPTPLGKDNKGMQILEVASNIDVQDTFNKLAKYEYYMTNGLLARIILSFKRIFGFNF

Ga0183683_100312512

AGGAG

MTHNELRKGMRVQLTPIPIISNLPRFATVMDNMKGITRMVHIEEKNGYFADMGSVYVNEIQYVLFPDDMPQELEISEAHQKKLDLLTKIHWG

Ga0183683_10031256

GAGG

MENTFNINDFDKDRHAQPASFPQCRAIGLKFAKKGSVMNWRLQKQITGCMYGLAKENRLTFKKADSLLKGKTLPKVYFDKIKLYLEQQDS

Ga0183683_10031257

N/A

MKTKCKNPNGKSNMQTIKDSKIPLTKFNDFEKMEQYINELGYIYKGRNAFKEDRSIIYRHKNNKKHVFVKSTFDYLSPITMEMGTVWTVHSF

NMPFamsDB