Scaffold Ga0183683_1002817

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1002817
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6264
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016059	Metagenome	250	Y
F020817	Metagenome	222	Y
F034750	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100281712	F020817	GAGG	MIYFIIKEHHYENIENSYDIVASSKDIDAINDKLRGYQLINDDKNNVYSIVRYESPLLLTEEVA
Ga0183683_100281714	F034750	N/A	MSNEKIEIEIKKDTPKRPKKDNSKKGDIFLNCRCCGVLIRPDWYSRIDQRYCADCF
Ga0183683_100281719	F016059	AGGGGG	VKKYKVTASQTIYATYEIEVDADNEEQAKKIALDTSVNDWDDERFENYDALSIDEIEEVQ