NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0183683_1002445

Scaffold Ga0183683_1002445


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1002445 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6860
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002281Metagenome / Metatranscriptome575Y
F034750Metagenome174Y
F087891Metagenome110N
F089521Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100244510F034750N/AMQIKKIEIEIKKDTPKRPKKDNSKKGDIFLNCRCCGVLIRPDWYSQIDKRYCADCL
Ga0183683_100244512F089521AGGAMKYIIINKWQLKDSKIEPSYYIKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNEEALLLTEEVA
Ga0183683_100244516F002281GAGGMFNRSWKMKINHKIVGEHLGVPLRGDETFDELLKIEQQVKEHKERQQRIAEENANIQRVDAQTKKYWGK
Ga0183683_10024459F087891GGAMTDKNYYIGLSDISFYLTDDDGNIKTDKNGNEITYRLKDGIRYKPLEYITEGIELDMIEK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.