Scaffold Ga0183683_1001699

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1001699
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8685
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018403	Metagenome / Metatranscriptome	235	Y
F021555	Metagenome / Metatranscriptome	218	N
F023481	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100169912	F021555	AGGA	MDTLHITKPELHIFIDAEIEKYKSKKGRAFFYKKPKRLEVVGEKRIMRFDTKDRQFQIDGATGKRLYKKGGKRTTTQEHNMLVTDLDIQEGYKFRNVPMNQRLRYLLIGKKCLKFSYLADSDSFKVEFPKATRTLLKNLYAKNFEDFEQKGDV
Ga0183683_10016992	F018403	N/A	MDKQKTKISDSSKQEQLTMIDNIVIGTSEIGNKRIQLTKMIVNAVKNGKVTLKYKDKITGLTRHFEKLNKITNADIRGFVECYKEWLGVETDPTWNSKTDTGKERLRILKDSFWVALPSIKNDCLEKNKSGKEFTGNKNSEVFVNGEFAKKYSPNPMHSKEADQVTMKFSELKKASQNYLNDKSTNLNSDESASKDNSFVVSIKKLTRSINASKDELVLTQKDQQPGTEQAIKHLETACVKWSIEFNKVRQSNMTPEQVARLSQRK
Ga0183683_10016993	F023481	GGAG	MITKNKTSIENELKKLNSNFNTFNKIMSSFLVIATSESTFKNKSNKEIKTIVPVVSSTLKAINDSIYNN