Scaffold Ga0183683_1001532

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1001532
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9310
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003835	Metagenome / Metatranscriptome	466	Y
F025148	Metagenome / Metatranscriptome	203	N
F053650	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100153210	F053650	N/A	MFKKIIRKRRHKMFVDRYIVELQWESLNTMLVASATQWNDDVIKLLNNNAQLIRKYQRRKRWLKF
Ga0183683_100153218	F003835	N/A	MKSDLKTRNKIAQLFVDMNVGESKPVRLIEMVPLLKEVNDTSLIGHAIRFVKDADGFVTHVKKYRKTAIERRCENKKM
Ga0183683_10015328	F025148	N/A	MAKADFAKGHGTILSGSVKYARMTNQSGPDQMSEKYGCDLELDEPSIKQLTDLGILEHVRAKDPQGNLKHDVPVVKIKSINIPKGYLANRQAFDGLIGDGSEIRANVWIKKWEHKGKKGLSIWLSAFVITKLVEYTINDSDQLFEGLPDLPELTAEQSAPVSSNKPQVATASQGFDNDDDLPF