NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000686

Scaffold Ga0183683_1000686


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000686 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16479
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018479Metagenome / Metatranscriptome235Y
F021314Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100068610F018479AGGMSTNIQGLVDRTYREYLEPMDDLTSYTTLNEGAELSASDTVITFDGNLLTQEEEDAMDAGTIIECEQELMRCVSLDTVNNQVTVVRGVRGTTASTHADGSIIKIAPPFPRKVVFDAVCDQIKNLYPTLFATETKNVTSKTGYIILDGANDNYLIAPVKAISQQTDFSAGSDETGVVYSGVGVELVDLPNPFTYTDADGVSQTVTYTNNGPNKVNAVQVYNVSAGHTVFITFKKKFVEPTAEADTLVTIGLESEYEPIIMAGVAAQLLSGRDIPTATADYVSDQLATQTFPVNSASSIRNSLLAYQRVLIEQARKDLRARFPETVTINSITY
Ga0183683_10006866F021314GGAGMEEITQQENTESADESTEGIKQLREEYKKLKAENKQFKADAMNNALGSLGLTADKGIGKAVTKLYDGDANVDSIKEFVAQEFGEVSSSEQPSETPVAENVIEAQSRVEQLNKIGVNAEPVDIGKEFLNFVTDSNTSTRDSINAKMRMMETLKEQNK
Ga0183683_10006868F003693GAGGMIKSKQALIDISADNNNSLGVQTEGMLLCGVQFPAAMTGTAITFDFSMDNSTFVDVKETDGTDVSYSVSAGDVLRVDPSGWAFASNGFLRVTSNGNEAADRKIILHFRHS
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