Scaffold Ga0183683_1000564

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000564
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19053
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F023877	Metagenome / Metatranscriptome	208	Y
F032075	Metagenome / Metatranscriptome	181	Y
F092098	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100056413	F015795	GAGG	MSKSGTLYMMMRLSYEQAIDDYNNNKTNSLLDAYKKYYQINVGMTPTDPQGDLINFYDEDNSQECLI
Ga0183683_10005642	F032075	GGAG	MSKLHYTKYQENYKNYILDCISDEDDLIGKNLSREEKIKYLFDRFNSEYGWKVGRTRNDTKQNVIAEWLSGIAIHIPYSYCDIIELAKNMGSVDDNLTSVQEDRICENYWNFMAYMILLLEKEIKEVA
Ga0183683_10005643	F092098	AGGAGG	MKININIETDNSAFWNHDEDSENPTFDYSEVERILKEIMPKFEYRDSGKCIDINGNTVGSYSINKEGA
Ga0183683_10005646	F023877	GAGG	MTIKQMIKEYVDDHFKHFGFYPYEVEVNGQVYSYGGYWEILEEVNDE