Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000559 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1000559 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19174
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (61.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19174

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (61.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F030882	Metagenome	184	N
F032821	Metagenome	179	N
F039822	Metagenome / Metatranscriptome	163	Y
F046989	Metagenome	150	N
F054160	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10005592	F039822	N/A	MSRIESLKKDYESKILEADENIKILLNNPVIIPDHTDINKEIDQQLEKKEKNYSKLQHLLSYIPKETNGK
Ga0183683_100055930	F017045	AGGA	MAKSNSLLRRYDKLNKLHGVIMQKPKTNNRQCVHSLQAFKKYIKTYRQIVCVENEDSKFIHAQP
Ga0183683_100055936	F030882	AGAAG	MDFKGLIDHYETLSKAELIEKLVYKNAKLLTQENVIEKLQDENKRLTEVEVGHKKINGELTEQIKQLKGEK
Ga0183683_100055937	F016292	N/A	MTNHPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKAALPSNCSFTGGTIAHEIIQKILCKNLTYEQALKAVEKKITNYVSIDEKDDLKFGHIIDNMEDLVNNHLANINEVGKQKWQSELEYTHWADGIKTYFLAYVDLVGQVDFGDIKNVFGTLTKTKKGFSYSKKKCPKVPYHSDCLQIALYSKLLPTHKPFLTYASDSDRVVFTPGNCVELRKESLQFYYEELVLYQQCWEKKLELANGDPKVLAMLCKPDLSEIRKDGFWWKGISPEIIERFRSYYGL
Ga0183683_100055940	F046989	AGG	MKAFLFLVLLTQQGLHYEKIPIKNYTNCDDAYASKATWYDNPKFEDGNGELWGFYIYKNKQIIASYCKDQKGNWLL
Ga0183683_100055941	F032821	AGG	MIEVKLDLYDIMAASQTGLLRVFESLRLKQNWGHNYKGSVNDQISKSISGACAELAVCRYLETEFNFHVNHGGKADIIWHDIHLQVRSQLPKKNNSLIIRPKGSKPNEIYILVIDKAPIFEIHGFINSTHVLGTDRFLTDFGISNRPKVHSLGLDTLTPIKFLKDGAWN
Ga0183683_100055944	F054160	N/A	MKYFEKFDKDLINNKNLNSHEKLIYVICKSFEFAPNGCRISHKYLMKRTGIKTIVTLTKCLDRLQLFGLLARKQINNGTNHYVFEKNLMQDYIQHNLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1000559

Overview

Ecosystem & Geography

Associated Families

Sequences