Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000520 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1000520 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20086
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (84.09%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

20086

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (84.09%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F023319	Metagenome	210	N
F023748	Metagenome	209	Y
F024676	Metagenome	205	Y
F054940	Metagenome	139	Y
F095588	Metagenome	105	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100052011	F023748	GGAG	MSEYKYTYRFSEQTVDTRYYKVESNTKLTQAEMQDLAWSVEQTEGETFTCNEGKATFEGTEFGDDAQYQMEEGEEDLADD
Ga0183683_100052013	F023319	GAG	MSKKIKCQKEDCSNKAYPEDMENRACNLLLCDDCYTEIRYLLADYLDINIQEIKI
Ga0183683_100052014	F095588	GAG	MKYKVEIELDFNRRPSKKDVLDRLFDMLKDNKVNYKLHKYNNSLYKKVERSIKNDKYK
Ga0183683_100052016	F024676	N/A	MKNVMYNKNNMYVIAMPYPNQVELPDILEEDDGKVMYFKNKTDAKKFLQNLYDERNIQIQALIDDNIEIMSVQ
Ga0183683_100052019	F054940	N/A	MNLLEKEIKELIKERYYEYLEEGYESFEAMELAKRDIHETKEVEIDAYNKIYDSSFDID
Ga0183683_10005203	F105336	AGGAG	MKLKQQQLNKIEQILSDLERKVEEMEQQDYMTFDLGKDLQNISYMLDVLREELKK
Ga0183683_10005208	F012581	N/A	MPKFTLYAKKVYYYRKEINARDRKTAEKRGDQYESERLFIPTGEEFYITSIEENEDVNQD
Ga0183683_10005209	F008925	AGGAG	MSTKTIKPTIDAVTLNLINKLKKIDDTINEGAWEYIHLGDILRLQDAFAEVISYYDLKKEGGIHEYGEHQGKYQQLWYSDYVCHTDPKAFDPSKVEEEDDDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1000520

Overview

Ecosystem & Geography

Associated Families

Sequences